setriq._C#

Module Contents#

Functions#

cdr_dist(→ List[float])

levenshtein(→ List[float])

tcr_dist_component(→ List[float])

hamming(→ List[float])

jaro(→ List[float])

jaro_winkler(→ List[float])

longest_common_substring(→ List[float])

optimal_string_alignment(→ List[float])

cdr_dist_sd(→ float)

levenshtein_sd(→ float)

tcr_dist_component_sd(→ float)

hamming_sd(→ float)

jaro_sd(→ float)

jaro_winkler_sd(→ float)

longest_common_substring_sd(→ float)

optimal_string_alignment_sd(→ float)

setriq._C.cdr_dist(sequences: Sequence[str], substitution_matrix: List[List[float]], index: Dict[str, int], gap_opening_penalty: float, gap_extension_penalty: float) → List[float]#
setriq._C.levenshtein(sequences: Sequence[str], extra_cost: float) → List[float]#
setriq._C.tcr_dist_component(sequences: Sequence[str], substitution_matrix: List[List[float]], index: Dict[str, int], gap_penalty: float, gap_symbol: str, weight: float) → List[float]#
setriq._C.hamming(sequences: Sequence[str], mismatch_score: float) → List[float]#
setriq._C.jaro(sequences: Sequence[str], jaro_weights: List[float]) → List[float]#
setriq._C.jaro_winkler(sequences: Sequence[str], p: float, max_l: int, jaro_weights: List[float]) → List[float]#
setriq._C.longest_common_substring(sequences: Sequence[str]) → List[float]#
setriq._C.optimal_string_alignment(sequences: Sequence[str]) → List[float]#
setriq._C.cdr_dist_sd(a: str, b: str, substitution_matrix: List[List[float]], index: Dict[str, int], gap_opening_penalty: float, gap_extension_penalty: float) → float#
setriq._C.levenshtein_sd(a: str, b: str, extra_cost: float) → float#
setriq._C.tcr_dist_component_sd(a: str, b: str, substitution_matrix: List[List[float]], index: Dict[str, int], gap_penalty: float, gap_symbol: str, weight: float) → float#
setriq._C.hamming_sd(a: str, b: str, mismatch_score: float) → float#
setriq._C.jaro_sd(a: str, b: str, jaro_weights: List[float]) → float#
setriq._C.jaro_winkler_sd(a: str, b: str, p: float, max_l: int, jaro_weights: List[float]) → float#
setriq._C.longest_common_substring_sd(a: str, b: str) → float#
setriq._C.optimal_string_alignment_sd(a: str, b: str) → float#