Index A | B | C | D | E | F | H | I | J | K | L | M | O | R | S | T A add_token() (setriq.modules.substitution.SubstitutionMatrix method) (setriq.modules.SubstitutionMatrix method) (setriq.SubstitutionMatrix method) B BLOSUM45 (in module setriq) (in module setriq.modules) (in module setriq.modules.substitution) BLOSUM62 (in module setriq) (in module setriq.modules) (in module setriq.modules.substitution) BLOSUM90 (in module setriq) (in module setriq.modules) (in module setriq.modules.substitution) C cdr_dist() (in module setriq._C) (in module setriq.modules.single_dispatch) cdr_dist_sd() (in module setriq._C) CdrDist (class in setriq) (class in setriq.modules) (class in setriq.modules.distances) check_jaro_weights() (in module setriq.modules.utils) check_jaro_winkler_params() (in module setriq.modules.utils) components (setriq.modules.distances.TcrDist attribute) (setriq.modules.TcrDist attribute) (setriq.TcrDist attribute) D default_definition (setriq.modules.distances.TcrDist property) (setriq.modules.TcrDist property) (setriq.TcrDist property) E enforce_list() (in module setriq.modules.utils) ensure_equal_sequence_length() (in module setriq.modules.utils) ensure_equal_sequence_length_sd() (in module setriq.modules.utils) F forward() (setriq.CdrDist method) (setriq.Hamming method) (setriq.Jaro method) (setriq.Levenshtein method) (setriq.LongestCommonSubstring method) (setriq.modules.CdrDist method) (setriq.modules.distances.CdrDist method) (setriq.modules.distances.Hamming method) (setriq.modules.distances.Jaro method) (setriq.modules.distances.Levenshtein method) (setriq.modules.distances.LongestCommonSubstring method) (setriq.modules.distances.OptimalStringAlignment method) (setriq.modules.distances.TcrDist method) (setriq.modules.distances.TcrDistComponent method) (setriq.modules.Hamming method) (setriq.modules.Jaro method) (setriq.modules.Levenshtein method) (setriq.modules.LongestCommonSubstring method) (setriq.modules.OptimalStringAlignment method) (setriq.modules.TcrDist method) (setriq.OptimalStringAlignment method) (setriq.TcrDist method) from_json() (setriq.modules.substitution.SubstitutionMatrix class method) (setriq.modules.substitution.SubstitutionMatrix method) (setriq.modules.SubstitutionMatrix class method) (setriq.modules.SubstitutionMatrix method) (setriq.SubstitutionMatrix class method) (setriq.SubstitutionMatrix method) H Hamming (class in setriq) (class in setriq.modules) (class in setriq.modules.distances) hamming() (in module setriq._C) (in module setriq.modules.single_dispatch) hamming_sd() (in module setriq._C) I index (setriq.modules.substitution.SubstitutionMatrix attribute), [1] (setriq.modules.SubstitutionMatrix attribute), [1] (setriq.SubstitutionMatrix attribute), [1] J Jaro (class in setriq) (class in setriq.modules) (class in setriq.modules.distances) jaro() (in module setriq._C) (in module setriq.modules.single_dispatch) jaro_sd() (in module setriq._C) jaro_winkler() (in module setriq._C) (in module setriq.modules.single_dispatch) jaro_winkler_sd() (in module setriq._C) JaroWinkler (class in setriq) (class in setriq.modules) (class in setriq.modules.distances) K keys() (setriq.modules.substitution.SubstitutionMatrix method) (setriq.modules.SubstitutionMatrix method) (setriq.SubstitutionMatrix method) L Levenshtein (class in setriq) (class in setriq.modules) (class in setriq.modules.distances) levenshtein() (in module setriq._C) (in module setriq.modules.single_dispatch) levenshtein_sd() (in module setriq._C) longest_common_substring() (in module setriq._C) (in module setriq.modules.single_dispatch) longest_common_substring_sd() (in module setriq._C) LongestCommonSubstring (class in setriq) (class in setriq.modules) (class in setriq.modules.distances) M module setriq setriq._C setriq.modules setriq.modules.distances setriq.modules.single_dispatch setriq.modules.substitution setriq.modules.utils O optimal_string_alignment() (in module setriq._C) (in module setriq.modules.single_dispatch) optimal_string_alignment_sd() (in module setriq._C) OptimalStringAlignment (class in setriq) (class in setriq.modules) (class in setriq.modules.distances) R required_input_keys (setriq.modules.distances.TcrDist property) (setriq.modules.TcrDist property) (setriq.TcrDist property) S setriq module setriq._C module setriq.modules module setriq.modules.distances module setriq.modules.single_dispatch module setriq.modules.substitution module setriq.modules.utils module single_dispatch() (in module setriq.modules.utils) substitution_matrix (setriq.modules.substitution.SubstitutionMatrix attribute), [1] (setriq.modules.SubstitutionMatrix attribute), [1] (setriq.SubstitutionMatrix attribute), [1] SubstitutionMatrix (class in setriq) (class in setriq.modules) (class in setriq.modules.substitution) T tcr_dist() (in module setriq.modules.single_dispatch) tcr_dist_component() (in module setriq._C) tcr_dist_component_sd() (in module setriq._C) TCR_DIST_DEFAULT (in module setriq.modules.utils) tcr_dist_sd_component_check() (in module setriq.modules.utils) TcrDist (class in setriq) (class in setriq.modules) (class in setriq.modules.distances) TcrDistComponent (class in setriq.modules.distances) TcrDistDef (in module setriq.modules.utils)